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They will work on both. The pins in both connectors are nearly identical. That being said, the easiest and cheapest thing to do would be to buy the crimper and connector set that Bill linked and then only use two wires and two pins in the connectors instead of three where you only need two...

For 3 wires connections Id use Futaba connectors. For 2 wire connections Id use JST-RCY connectors. Or you can get THIS set that has both.